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Multi-and many-objective optimization: present and future in de novo drug design
  • Applied Ai (AAi)
  • Drug Design
Date : 2023, December 18

Authors : Jaqueline S. Angelo, Isabella A. Guedes, Helio J. C. Barbosa and Laurent E. Dardenne

Effect of high-intensity statin therapy on atherosclerosis (IBIS-4): Manual versus automated methods of IVUS analysis
  • Machine Learning Techniques
  • Health
  • Image Processing
Date : 2023, September 01

Authors : Bass, RD; García-García, HM; Ueki, Y; Holmvang, L; Pedrazzini, G; Roffi, M; Koskinas, KC; Shibutani, H; Losdat, S; Ziemer, PGP; Blanco, PJ; Levine, MB; Bourantas, CV; Räber, L.

( m, n)-mer-a simple statistical feature for sequence classification
  • Bioinformatics
  • IA applied to genomic data
Date : 2023, July 01

Authors : Amanda Araújo Serrão de Andrade , Marco Grivet , Otávio Brustolini, Ana Tereza Ribeiro Vasconcelos

Inference of differentially expressed genes using generalized linear mixed models in a pairwise fashion
  • IA applied to genomic data
  • Bioinformatics
Date : 2023, March 09

Authors : Douglas Terra Machado, Otávio José Bernardes Brustolini, Yasmmin Côrtes Martin, Marco Antonio Grivet Mattoso Maia and Ana Tereza Ribeiro de Vasconcelos

PPIntegrator: semantic integrative system for protein-protein interaction and application for host-pathogen datasets
  • IA applied to genomic data
  • Bioinformatics
Date : 2023, March 01

Authors : Martins YC, Ziviani A, Cerqueira E Costa MO, Cavalcanti MCR, Nicolás MF, de Vasconcelos ATR.

The gene regulatory network of Staphylococcus aureus ST239-SCCmecIII strain Bmb9393 and assessment of genes associated with the biofilm in diverse backgrounds
  • IA applied to genomic data
  • Bioinformatics
Date : 2023, January 10

Authors : Maiana de Oliveira Cerqueira e Costa, Ana Paula Barbosa do Nascimento, Yasmmin Cortes Martins, Marcelo Trindade dos Santos, Agnes Marie de Sá Figueiredo, Ernesto Perez-Rueda and Marisa Fabiana Nicolás

Fast Algorithm for Denial Constraint Discovery
  • Data Centric AI
Date : 2022, December 12

Authors : Eduardo Pena, Fabio Porto, Felix Neumann

TSPred: A Framework for nonstationary time series prediction
  • Machine Learning Techniques
  • Oil & Gas
Date : 2022, December 01

Authors : Rebecca Salles, Esther Pacitti, Eduardo Bezerra, Fabio Porto, Eduardo Ogasawara

Machine Learning Approaches to Extreme Weather Events Forecast in Urban Areas: Challenges and Initial Results
  • Deep Learning Architecture and Peformance
  • Meteorology
Date : 2022, December 01

Authors : Fabio Porto, Mariza Ferro, Eduardo Ogasawara, Thiago Moeda, Claudio Tenorio de Barros, Anderson Chaves, Rocio Zorrilla, Rafael Pereira, Rafaela Nascimento, Rebecca Salles, Eduardo Bezerra

Data Assimilation by Neural Network for Ocean Circulation: Parallel Implementation
  • Data Science - Applying Statistics and ML to solve prediction problems
  • Meteorology
Date : 2022, May 25

Authors : Campos Velho, H. F., Furtado, H. C. M., Sambatti, S. B. M., Osthoff Ferreira de Barros, C. B., Welter, M. E. S., Souto, R. P., Carvalho, D. ., & Cardoso, D. O. (2022).

Analyzing flight delay prediction under concept drift
Date : 2022, January 20

Authors : Lucas Giusti, Leonardo Carvalho, Antonio Tadeu Gomes, Rafaelli Coutinho, Jorge Soares & Eduardo Ogasawara

Human vs. machine vs. core lab for the assessment of coronary atherosclerosis with lumen and vessel contour segmentation with intravascular ultrasound
Date : 2022, January 03

Authors : Bass, R; García-García, HM; Sanz-Sánchez, J; Ziemer, PGP; Bulant, CA; Kuku, KO; Kahsay, YA; Beyene, S; Melaku, G; Otsuka, T; Choi, J-H; Fernández-Peregrina, E; Erdogan, E; Gonzalo, N; Bourantas, CV; Blanco, PJ; Räber, L.

Fully automated lumen and vessel contour segmentation in intravascular ultrasound dataset
Date : 2022, January 01

Authors : Blanco, PJ; Ziemer, PGP; Bulant, CA; Ueki, Y; Bass, R; Räber, L; Lemos, PA; García-García, HM

TSPred: A framework for nonstationary time series prediction
Date : 2022, January 01

Authors : Rebecca Salles, Esther Pacitti, Eduardo Bezerra, Fábio Porto, Eduardo S. Ogasawara

Testing the genomic stability of the Brazilian yellow fever vaccine strain using next-generation sequencing data.
  • IA applied to genomic data
  • Bioinformatics
Date : 2021, January 01

Authors : Serrão de Andrade; Amanda Araújo, Soares, André E. R.; Paula de Almeida; Luiz Gonzaga; CIAPINA, LUCIANE PRIOLI; PESTANA, CRISTIANE PINHEIRO; AQUINO, CAROLINA LESSA; MEDEIROS, MARCO ALBERTO; RIBEIRO DE VASCONCELOS, ANA TEREZA

Predicting Runtime in HPC Environments for an Efficient Use of Computational Resources
Date : 2021, January 01

Authors : Ferro, Mariza; Klôh Vinicius P; Gritz, Matheus; De Sá, Vitor; Schulze, Bruno

You Shall Not Pass: Avoiding Spurious Paths in Shortest-Path Based Centralities in Multidimensional Complex Networks
Date : 2021, January 01

Authors : Klaus Wehmuth, Artur Ziviani, Leonardo Chinelate Costa, Ana Paula Couto da Silva, Alex Borges Vieira

Evaluating Temporal Bias in Time Series Event Detection Methods
Date : 2021, January 01

Authors : Luciana E. G. Escobar, Rebecca Salles, Janio Lima, Cristiane Gea, Lais Baroni, Artur Ziviani, Paulo F. Pires, Flávia Coimbra Delicato, Rafaelli Coutinho, Laura Assis, Eduardo S. Ogasawara

Drug design and repurposing with DockThor-VS web server focusing on SARS-CoV-2 therapeutic targets and their non-synonym variants
Date : 2021, January 01

Authors : Guedes, I.A.; Costa, L.S.C.; dos Santos, K.B.; Karl, A.L.M.; Rocha, G.K.; Teixeira, I..M.; Galheigo, M.M; Medeiros, V.; Krempser, E.; Custódio, F.L.; Barbosa, H.J.C.; Nicolas, M.F.; Dardenne, L.

Exome-Wide Search for Genes Associated With Central Nervous System Inflammatory Demyelinating Diseases Following CHIKV Infection: The Tip of the Iceberg.
  • Machine Learning Techniques
  • IA applied to genomic data
  • Bioinformatics
Date : 2021, January 01

Authors : Alves-Leon, S. V. F.; Herlinger, C. dos S.; Fontes-Dantas, A. L.; Rueda-Lopes, F. L.; Francisco, F.C.; Gonçalves, R. da S.; De Araújo, J.P. da C.; Rêgo, A. D., Higa, C.C.da S.; Geber, L. M.; Guimarães, A. L.; De Menezes, A.P. de C.; Tôrres, M. T. de P., Maia, M. C., Nogueira, R. A.; França, B. M. G.; da Silva, L. C.; Naurath, M. M.; Correia, C.; Vasconcelos, A. S. da S.; Tanuri, C. C. F.; Ferreira, A.; Cardoso, O.; Aguiar, C.C.; Santana, R.

Large-Scale Protein Interactions Prediction by Multiple Evidence Analysis Associated With an In-Silico Curation Strategy
Date : 2021, January 01

Authors : Martins, Y. C.; Ziviani, A.; Nicolás, M. F.; De Vasconcelos, A. T. R.

New machine learning and physics based scoring functions for drug discovery
Date : 2021, January 01

Authors : Guedes, I.A; Barreto, A.M.S.; Almeida, D,M.; Krempser, E.; Kuenemann, M.A., Sperandio, O.; Dardenne, L.; Miteva, M.A.

Towards optimizing the execution of spark scientific workflows using machine learning-based parameter tuning
  • Big Data Processing techniques, systems and challenges
  • Machine Learning Techniques
  • Bioinformatics
Date : 2021, January 01

Authors : Douglas E. M. de Oliveira, Fábio Porto, Cristina Boeres, Daniel de Oliveira

STConvS2S: Spatiotemporal Convolutional Sequence to Sequence Network for weather forecasting
Date : 2021, January 01

Authors : Rafaela Castro, Yania Molina Souto, Eduardo S. Ogasawara, Fábio Porto, Eduardo Bezerra

Managing Hypothesis of Scientific Experiments with PhenoManager
Date : 2021, January 01

Authors : Leonardo S. Ramos, Fábio Porto, Daniel de Oliveira

Two geoscience applications by optimal neural network architecture
Date : 2020, January 01

Authors : ANOCHI, Juliana Aparecida; HERNÁNDEZ TORRES, Reynier; CAMPOS VELHO, Haroldo Fraga de

Artificial Neural Network for Data Assimilation by WRF Model in Rio de Janeiro, Brazil
Date : 2020, January 01

Authors : ALMEIDA, VINÍCIUS ALBUQUERQUE DE ALMEIDA ALBUQUERQUE DE ; França, Gutemberg Borges ; Fraga Campos Velho, Haroldo ; EBECKEN, NELSON F. FAVILLA

Data assimilation for nowcasting in the terminal area of Rio de Janeiro
Date : 2020, January 01

Authors : ALMEIDA, VINÍCIUS ALBUQUERQUE DE ; França, Gutemberg Borges ; Velho, Haroldo Campos

SUQ2: Uncertainty Quantification Queries over Large Spatio-temporal Simulations
Date : 2020, January 01

Authors : Noel Moreno Lemus, Fábio Porto, Yania Molina Souto, Rafael S. Pereira, Ji Liu, Esther Pacciti, Patrick Valduriez

An Algorithmic Information Distortion in Multidimensional Networks
Date : 2020, January 01

Authors : Felipe S. Abrahão, Klaus Wehmuth, Hector Zenil, Artur Ziviani

Automated lumen segmentation using multi-frame convolutional neural networks in Intravascular Ultrasound datasets
Date : 2020, January 01

Authors : Ziemer, PGP; Bulant, CA; Orlando, JI; Maso Talou, GD; Mansilla Álvarez, LA; Guedes Bezerra, C; Lemos, PA; García-García, HM; Blanco, PJ

SMCis: Scientific Applications Monitoring and Prediction for HPC Environments In: Communications in Computer and Information Science.1 ed
Date : 2020, January 01

Authors : Silva, Gabrieli; Klôh, Vinícius; Yokoyama, André; Gritz, Matheus; Schulze, Bruno; Ferro, Mariza

The virus and socioeconomic inequality: An agent-based model to simulate and assess the impact of interventions to reduce the spread of COVID-19 in Rio de Janeiro, Brazil
Date : 2020, January 01

Authors : Klôh Vinicius P; Silva, Gabrieli Dutra; Ferro, Mariza; Araújo, Eric; Melo, Cristiano Barros; Lima, José R. P. De Andrade; Martins, Ernesto Rademaker

BioinfoPortal: A scientific gateway for integrating bioinformatics applications on the Brazilian national high-performance computing network
  • IA applied to genomic data
  • Bioinformatics
Date : 2020, January 01

Authors : Ocaña, K.A.C.S.; Galheigo, M.; Osthoff, C.; Gadelha, L.M.R.; Porto, F.; Gomes, A. T.; De Oliveira, D.; Vasconcelos, A. T.

Parallel computation of PDFs on big spatial data using Spark
Date : 2020, January 01

Authors : Ji Liu, Noel Moreno Lemus, Esther Pacitti, Fábio Porto, Patrick Valduriez

Evaluation of nature inspired metaheuristics for search and reconnaissance operations by rotary-wing aircrafts
Date : 2019, January 01

Authors : Yokoyama, André M.; Mury, Antonio; Schulze, Bruno; Ferro, Mariza

An Exploratory Study of Deep Learning for Predicting Computational Tasks Behavior in HPC Systems
  • Data Science - Applying Statistics and ML to solve prediction problems
  • Bioinformatics
Date : 2023, November 08

Authors : PORTO, ALEXANDRE H.L. ; Coelho, Micaella ; Ocaña, Kary ; OSTHOFF, CARLA ; BOITO, FRANCIELI ; CARDOSO, DOUGLAS O

Data Science Platform Applied to health in Contribution to the Brazilian Unified Health System
  • ML Systems - Design and Development
  • Health
Date : 2023, October 15

Authors : Marcel Pedroso, Rebecca Salles, Raphael Saldanha, Vinicius Kreischer, Victor Ribeiro, Fabio Porto

subset Modeling: A Domain Partitioning Strategy for data Intensive Machine Learning
  • Data Centric AI
  • Health
  • Ethics and Bias in AI
Date : 2023, October 02

Authors : Victor Ribeiro, Eduardo Pena, Raphael Saldanha, Reza Akbarinia, Patrick Valduriez, Falaah Arif Khan, Julia Stoyanovich, Fabio Porto

Machine learning prediction models of coronary plaque progression after one-year of high-intensity rosuvastatin therapy from intravascular ultrasound images
  • Machine Learning Techniques
  • Health
  • Image Processing
Date : 2023, August 01

Authors : García-García, HM; Bulant, CA; Bass, R; Boroni, G; Clausse, A; Lemos, PA; Blanco, PJ; Losdat, S; Räber, L.

Desenvolvimento de um Framework de Aprendizado de Máquina no Apoio a Gateways Científicos Verdes, Inteligentes e Eficientes: BioinfoPortal como Caso de Estudo Brasileiro
  • Data Science - Applying Statistics and ML to solve prediction problems
  • Bioinformatics
Date : 2022, October 19

Authors : Coelho, Micaella ; FREIRE, GUILHERME ; Ocaña, Kary ; OSTHOFF, CARLA ; GALHEIGO, MARCELO ; CARNEIRO, ANDRÉ R. ; BOITO, FRANCIELI ; NAVAUX, PHILIPPE ; CARDOSO, DOUGLAS O. .

Development of a Machine Learning Framework to Support Efficient Scientific Gateways
  • Data Science - Applying Statistics and ML to solve prediction problems
  • Bioinformatics
Date : 2022, October 09

Authors : COELHO, M. ; FREIRE, G. ; Osthoff, C. ; CARNEIRO, ANDRÉ RAMOS ; GALHEIGO, MARCELO ; BOITO, FRANCIELI ZANON ; NAVAUX, PHILIPPE OA ; CARDOSO, D.

Otimização de dataflows BigData por meio de reuso de dados
  • Big Data Processing techniques, systems and challenges
Date : 2022, October 01

Authors : Gustavo Decarlo, Daniel de Oliveira, fabio Porto

A Data-Driven Model Selection Approach to Spatio-temporal Prediction
  • Machine Learning Techniques
  • Data Centric AI
  • Meteorology
Date : 2022, September 15

Authors : Rocio Zorrilla, Eduardo Ogasawara, Patrick Valduriez, Fabio Porto

Parallel execution of an artificial neural network for data assimilation of the shallow-water 2D problem.
  • ML Systems - Design and Development
  • Meteorology
Date : 2021, September 01

Authors : Campos Velho. H.F. ; SABATINI, S.B.M ; FURTADO, H.C.M. ; OSTHOFF, CARLA ; WELTER, M. E. S. ; CARVALHO, DIEGO ; CARDOSO, D. ; Souto, Roberto P. .

DJEnsemble: a Cost-Based Selection and Allocation of a Disjoint Ensemble of Spatio-temporal Models
Date : 2021, January 01

Authors : Rafael S. Pereira, Yania Molina Souto, Anderson Chaves da Silva, Rocío Zorilla, Brian Tsan, Florin Rusu, Eduardo S. Ogasawara, Artur Ziviani, Fábio Porto

SAGAD: Synthetic Data Generator for Tabular Datasets
Date : 2021, January 01

Authors : Henrique Matheus F. da Silva, Rafael S. Pereira, Fábio Porto

Predição por árvores de regressão da estatura de pacientes após tratamento de hipopituitarismo
Date : 2021, January 01

Authors : Rosa, Caroline; Vieira, Alex B.; Ziviani, A.; Ferro, Mariza

Predição do Número de Casos de SARS-Cov-2 Através da Análise de Esgotos na Cidade de Niterói-RJ Utilizando Árvores de Regressão
Date : 2021, January 01

Authors : Bonifácio, Carmen; Ferro, Mariza; Fábio Porto

Modelagem de um dataflow para detecção, classificação e predição temporal de anomalias
Date : 2021, January 01

Authors : Moeda, Thiago; Ferro, Mariza; Ogasawara, Eduardo; Fábio Porto

Detecção e classificação de bots usando redes neurais artificiais e análise de sentimentos
Date : 2021, January 01

Authors : Silva, Gabrieli; Ramos, Eliaquim; Araujo, Eric; Borges, Fabio; Ferro, Mariza

Avaliação da alteração de precisão e leitura de dados para melhoria no desempenho e consumo de energia de algoritmos de aprendizado de máquina
Date : 2021, January 01

Authors : Vieira, Vitor; Paula, Felipe; Schulze, Bruno; Ferro, Mariza

Parallel execution of an artificial neural network for data assimilation of the shallow-water 2D problem
Date : 2021, January 01

Authors : CAMPOS VELHO, Haroldo Fraga de; SAMBATTI, Sabrina Bergoch Monteiro; FURTADO, Helaine Cristina Moraes; OSTHOFF, Carla; WELTER, Maria Eugenia Sausen.; SOUTO, Roberto Pinto; CARVALHO, Diego Moreira de Araujo; CARDOSO, Douglas de Oliveira

Disconnecting for the good: A network-oriented model for social contagion of opinions and social network interventions to increase adherence to social distancing In: Congresso da Sociedade Brasileira de Computação - IX Brazilian Workshop on Social Network Analysis and Mining, 2020, Cuiabá
Date : 2020, March 02

Authors : Araujo, Eric; Ferro, Mariza; Silva, Gabrieli

Em Busca de uma Inteligência Artificial Ecologicamente Viável: Um estudo de caso do Consumo Energético de Algoritmos de Árvore de Decisão
Date : 2020, January 01

Authors : Paula, Felipe; Silva, Gabrieli D; Ferro, Mariza; Vieira, Vitor G.; Schulze, Bruno

Desempenho e de Requisitos Computacionais Utilizando o Modelo Roofline: Um estudo para Aplicações de Inteligência Artificial e do NAS-HPC
Date : 2020, January 01

Authors : De Sá, Vitor; Klôh, Vinicius; Schulze, Bruno; Ferro, Mariza

Avaliação do Consumo de Energia e o Impacto da emissão de CO2 para algoritmos de Inteligência Artificial
Date : 2020, January 01

Authors : Paula, Felipe; Silva, Gabrieli D; Gritz, Matheus; Ferro, Mariza; Schulze, Bruno

Estimating the execution time of fully-online multiscale numerical simulations.
Date : 2020, January 01

Authors : FABIAN, J. H. L. ; GOMES, A. T. A. ; OGASAWARA, E

Estimating the execution time of the coupled stage in multiscale numerical simulations. In: Latin America High Performance Computing Conference (CARLA), 2020, Cuenca, EQ
Date : 2020, January 01

Authors : FABIAN, J. H. L. ; GOMES, A. T. A. ; OGASAWARA, E.

A Conceptual Vision Toward the Management of Machine Learning Models
Date : 2019, January 01

Authors : Daniel Nascimento Ramos da Silva, Adolfo Simões, Carlos Cardoso, Douglas E. M. de Oliveira, João N. Rittmeyer, Klaus Wehmuth, Hermano Lustosa, Rafael S. Pereira, Yania Molina Souto, Luciana E. G. Vignoli, Rebecca Salles, Heleno de S. C. Jr, Artur Ziviani, Eduardo S. Ogasawara, Flávia Coimbra Delicato, Paulo de Figueiredo Pires, Hardy Leonardo da Cunha Pereira Pinto, Luciano Maia, Fábio Porto

Towards an Autonomous Framework for HPC Optimization: Using Machine Learning for Energy and Performance Modeling
Date : 2019, January 01

Authors : Klôh, Vinicius; Gritz, Matheus; Schulze, Bruno; Ferro, Mariza

Estimating Protein Structure Prediction Models Quality Using Convolutional Neural Networks
Date : 2018, January 01

Authors : E. C. Lima, F. L. Custódio, G. K. Rocha and L. E. Dardenne

Deep Learning Strategies for Enhanced Molecular Docking and Virtual Screening
  • Applied Ai (AAi)
  • Drug Design
Date : 2023, November 07

Authors : Matheus Müller Pereira da Silva, Isabella Alvim Guedes, Fábio Lima Custódio, Eduardo Krempser, Laurent Emmanuel Dardenne

Statistical Learning Using Neural Networks - A Guide for Statisticians and Data Scientists with Python
Date : 2020, September 02

Authors : Basilio de Braganca Pereira, Calyampudi Radhakrishna Rao, Fabio Borges de Oliveira

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